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Desertibacter xinjiangensis sp. nov., isolated from the soil of a Euphrates poplar forest, and emended description of the genus Desertibacter.

Identifieur interne : 002293 ( Main/Exploration ); précédent : 002292; suivant : 002294

Desertibacter xinjiangensis sp. nov., isolated from the soil of a Euphrates poplar forest, and emended description of the genus Desertibacter.

Auteurs : Fan Jiang [République populaire de Chine] ; Xiuqing Xue [République populaire de Chine] ; Xia Qiu [République populaire de Chine] ; Kundi Zhang [République populaire de Chine] ; Xulu Chang [République populaire de Chine] ; Xuyang Da [République populaire de Chine] ; Yali Tang [République populaire de Chine] ; Chengxiang Fang [République populaire de Chine] ; Youhao Guo [République populaire de Chine] ; Fang Peng [République populaire de Chine]

Source :

RBID : pubmed:25106921

Descripteurs français

English descriptors

Abstract

A pale pink and strictly aerobic bacterium, designated strain M71(T), was isolated from the soil of a Euphrates poplar forest in Xingjiang, PR China. Cells of the strain were Gram-reaction-negative, rod-shaped and motile by means of a single polar flagellum. Growth occurred at 10-37 °C (optimum 30 °C), at pH 6.0-9.0 (optimum pH 7.0-8.0) and with 0-2.0% NaCl (w/v, optimum 0%). Phylogenetic analysis, based on 16S rRNA gene sequences, indicated that strain M71(T) belongs to the genus Desertibacter in the family Rhodospirillaceae. The 16S rRNA gene sequence of this strain showed 96.2% sequence similarity with the type strain of Desertibacter roseus 2262(T). The respiratory quinone was Q-10 and the predominant cellular fatty acids were C(18:1)ω7c (53.2%), C(16:1)ω5c (11.0%), summed feature 3 (C(16:1)ω7c and/or C(16:1)ω6c, 10.2%) and C(16:0) (8.5%). The DNA G+C content was 71.2 mol% (HPLC). The strain contained phosphatidylcholine and phosphatidylethanolamine as the predominant polar lipids. On the basis of the phenotypic, chemotaxonomic and phylogenetic data, strain M71(T) is considered to represent a novel species of the genus Desertibacter, for which the name Desertibacter xinjiangensis sp. nov. is proposed. The type strain is M71(T) ( =CCTCC AB 209291(T) =CIP 110127(T)).

DOI: 10.1099/ijs.0.067009-0
PubMed: 25106921


Affiliations:


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Le document en format XML

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<term>Bacterial Typing Techniques (MeSH)</term>
<term>Base Composition (MeSH)</term>
<term>China (MeSH)</term>
<term>DNA, Bacterial (genetics)</term>
<term>Fatty Acids (chemistry)</term>
<term>Forests (MeSH)</term>
<term>Molecular Sequence Data (MeSH)</term>
<term>Phosphatidylcholines (chemistry)</term>
<term>Phosphatidylethanolamines (chemistry)</term>
<term>Phylogeny (MeSH)</term>
<term>Pigmentation (MeSH)</term>
<term>Populus (microbiology)</term>
<term>RNA, Ribosomal, 16S (genetics)</term>
<term>Rhodospirillaceae (classification)</term>
<term>Rhodospirillaceae (genetics)</term>
<term>Rhodospirillaceae (isolation & purification)</term>
<term>Sequence Analysis, DNA (MeSH)</term>
<term>Soil Microbiology (MeSH)</term>
<term>Ubiquinone (chemistry)</term>
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<term>ADN bactérien (génétique)</term>
<term>ARN ribosomique 16S (génétique)</term>
<term>Acides gras (composition chimique)</term>
<term>Analyse de séquence d'ADN (MeSH)</term>
<term>Chine (MeSH)</term>
<term>Composition en bases nucléiques (MeSH)</term>
<term>Données de séquences moléculaires (MeSH)</term>
<term>Forêts (MeSH)</term>
<term>Microbiologie du sol (MeSH)</term>
<term>Phosphatidylcholines (composition chimique)</term>
<term>Phosphatidyléthanolamine (composition chimique)</term>
<term>Phylogenèse (MeSH)</term>
<term>Pigmentation (MeSH)</term>
<term>Populus (microbiologie)</term>
<term>Rhodospirillaceae (classification)</term>
<term>Rhodospirillaceae (génétique)</term>
<term>Rhodospirillaceae (isolement et purification)</term>
<term>Techniques de typage bactérien (MeSH)</term>
<term>Ubiquinones (composition chimique)</term>
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<term>DNA, Bacterial</term>
<term>RNA, Ribosomal, 16S</term>
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<term>Acides gras</term>
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<term>Phosphatidyléthanolamine</term>
<term>Rhodospirillaceae</term>
<term>Ubiquinones</term>
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<term>Rhodospirillaceae</term>
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<term>ADN bactérien</term>
<term>ARN ribosomique 16S</term>
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<term>Rhodospirillaceae</term>
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<keywords scheme="MESH" qualifier="isolement et purification" xml:lang="fr">
<term>Rhodospirillaceae</term>
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<keywords scheme="MESH" qualifier="microbiologie" xml:lang="fr">
<term>Populus</term>
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<keywords scheme="MESH" qualifier="microbiology" xml:lang="en">
<term>Populus</term>
</keywords>
<keywords scheme="MESH" xml:lang="en">
<term>Bacterial Typing Techniques</term>
<term>Base Composition</term>
<term>China</term>
<term>Forests</term>
<term>Molecular Sequence Data</term>
<term>Phylogeny</term>
<term>Pigmentation</term>
<term>Sequence Analysis, DNA</term>
<term>Soil Microbiology</term>
</keywords>
<keywords scheme="MESH" xml:lang="fr">
<term>Analyse de séquence d'ADN</term>
<term>Chine</term>
<term>Composition en bases nucléiques</term>
<term>Données de séquences moléculaires</term>
<term>Forêts</term>
<term>Microbiologie du sol</term>
<term>Phylogenèse</term>
<term>Pigmentation</term>
<term>Techniques de typage bactérien</term>
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<div type="abstract" xml:lang="en">A pale pink and strictly aerobic bacterium, designated strain M71(T), was isolated from the soil of a Euphrates poplar forest in Xingjiang, PR China. Cells of the strain were Gram-reaction-negative, rod-shaped and motile by means of a single polar flagellum. Growth occurred at 10-37 °C (optimum 30 °C), at pH 6.0-9.0 (optimum pH 7.0-8.0) and with 0-2.0% NaCl (w/v, optimum 0%). Phylogenetic analysis, based on 16S rRNA gene sequences, indicated that strain M71(T) belongs to the genus Desertibacter in the family Rhodospirillaceae. The 16S rRNA gene sequence of this strain showed 96.2% sequence similarity with the type strain of Desertibacter roseus 2262(T). The respiratory quinone was Q-10 and the predominant cellular fatty acids were C(18:1)ω7c (53.2%), C(16:1)ω5c (11.0%), summed feature 3 (C(16:1)ω7c and/or C(16:1)ω6c, 10.2%) and C(16:0) (8.5%). The DNA G+C content was 71.2 mol% (HPLC). The strain contained phosphatidylcholine and phosphatidylethanolamine as the predominant polar lipids. On the basis of the phenotypic, chemotaxonomic and phylogenetic data, strain M71(T) is considered to represent a novel species of the genus Desertibacter, for which the name Desertibacter xinjiangensis sp. nov. is proposed. The type strain is M71(T) ( =CCTCC AB 209291(T) =CIP 110127(T)).</div>
</front>
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<Year>2015</Year>
<Month>02</Month>
<Day>26</Day>
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<DateRevised>
<Year>2020</Year>
<Month>05</Month>
<Day>14</Day>
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<Journal>
<ISSN IssnType="Electronic">1466-5034</ISSN>
<JournalIssue CitedMedium="Internet">
<Volume>64</Volume>
<Issue>Pt 11</Issue>
<PubDate>
<Year>2014</Year>
<Month>Nov</Month>
</PubDate>
</JournalIssue>
<Title>International journal of systematic and evolutionary microbiology</Title>
<ISOAbbreviation>Int J Syst Evol Microbiol</ISOAbbreviation>
</Journal>
<ArticleTitle>Desertibacter xinjiangensis sp. nov., isolated from the soil of a Euphrates poplar forest, and emended description of the genus Desertibacter.</ArticleTitle>
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<MedlinePgn>3690-3694</MedlinePgn>
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<AbstractText>A pale pink and strictly aerobic bacterium, designated strain M71(T), was isolated from the soil of a Euphrates poplar forest in Xingjiang, PR China. Cells of the strain were Gram-reaction-negative, rod-shaped and motile by means of a single polar flagellum. Growth occurred at 10-37 °C (optimum 30 °C), at pH 6.0-9.0 (optimum pH 7.0-8.0) and with 0-2.0% NaCl (w/v, optimum 0%). Phylogenetic analysis, based on 16S rRNA gene sequences, indicated that strain M71(T) belongs to the genus Desertibacter in the family Rhodospirillaceae. The 16S rRNA gene sequence of this strain showed 96.2% sequence similarity with the type strain of Desertibacter roseus 2262(T). The respiratory quinone was Q-10 and the predominant cellular fatty acids were C(18:1)ω7c (53.2%), C(16:1)ω5c (11.0%), summed feature 3 (C(16:1)ω7c and/or C(16:1)ω6c, 10.2%) and C(16:0) (8.5%). The DNA G+C content was 71.2 mol% (HPLC). The strain contained phosphatidylcholine and phosphatidylethanolamine as the predominant polar lipids. On the basis of the phenotypic, chemotaxonomic and phylogenetic data, strain M71(T) is considered to represent a novel species of the genus Desertibacter, for which the name Desertibacter xinjiangensis sp. nov. is proposed. The type strain is M71(T) ( =CCTCC AB 209291(T) =CIP 110127(T)).</AbstractText>
<CopyrightInformation>© 2014 IUMS.</CopyrightInformation>
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<LastName>Jiang</LastName>
<ForeName>Fan</ForeName>
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<Affiliation>China Center for Type Culture Collection (CCTCC), College of Life Sciences, Wuhan University, Wuhan 430072, PR China.</Affiliation>
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<ForeName>Xiuqing</ForeName>
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<Affiliation>China Center for Type Culture Collection (CCTCC), College of Life Sciences, Wuhan University, Wuhan 430072, PR China.</Affiliation>
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<Affiliation>China Center for Type Culture Collection (CCTCC), College of Life Sciences, Wuhan University, Wuhan 430072, PR China.</Affiliation>
</AffiliationInfo>
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<LastName>Zhang</LastName>
<ForeName>Kundi</ForeName>
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<AffiliationInfo>
<Affiliation>University of Chinese Academy of Sciences, Beijing 100039, PR China.</Affiliation>
</AffiliationInfo>
<AffiliationInfo>
<Affiliation>Qingdao Institute of Bioenergy and Bioprocess Technology, Chinese Academy of Sciences, Qingdao 266101, PR China.</Affiliation>
</AffiliationInfo>
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<ForeName>Xulu</ForeName>
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<Affiliation>China Center for Type Culture Collection (CCTCC), College of Life Sciences, Wuhan University, Wuhan 430072, PR China.</Affiliation>
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<LastName>Da</LastName>
<ForeName>Xuyang</ForeName>
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<Affiliation>China Center for Type Culture Collection (CCTCC), College of Life Sciences, Wuhan University, Wuhan 430072, PR China.</Affiliation>
</AffiliationInfo>
</Author>
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<LastName>Tang</LastName>
<ForeName>Yali</ForeName>
<Initials>Y</Initials>
<AffiliationInfo>
<Affiliation>Institute of Hydrobiology, Jinan University, Guangzhou 510632, PR China.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y">
<LastName>Fang</LastName>
<ForeName>Chengxiang</ForeName>
<Initials>C</Initials>
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<Affiliation>China Center for Type Culture Collection (CCTCC), College of Life Sciences, Wuhan University, Wuhan 430072, PR China.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y">
<LastName>Guo</LastName>
<ForeName>Youhao</ForeName>
<Initials>Y</Initials>
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<Affiliation>China Center for Type Culture Collection (CCTCC), College of Life Sciences, Wuhan University, Wuhan 430072, PR China.</Affiliation>
</AffiliationInfo>
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<LastName>Peng</LastName>
<ForeName>Fang</ForeName>
<Initials>F</Initials>
<AffiliationInfo>
<Affiliation>China Center for Type Culture Collection (CCTCC), College of Life Sciences, Wuhan University, Wuhan 430072, PR China.</Affiliation>
</AffiliationInfo>
</Author>
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<Language>eng</Language>
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<DataBank>
<DataBankName>GENBANK</DataBankName>
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<AccessionNumber>KC625488</AccessionNumber>
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<PublicationType UI="D013485">Research Support, Non-U.S. Gov't</PublicationType>
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<ArticleDate DateType="Electronic">
<Year>2014</Year>
<Month>08</Month>
<Day>08</Day>
</ArticleDate>
</Article>
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<Country>England</Country>
<MedlineTA>Int J Syst Evol Microbiol</MedlineTA>
<NlmUniqueID>100899600</NlmUniqueID>
<ISSNLinking>1466-5026</ISSNLinking>
</MedlineJournalInfo>
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<Chemical>
<RegistryNumber>0</RegistryNumber>
<NameOfSubstance UI="D004269">DNA, Bacterial</NameOfSubstance>
</Chemical>
<Chemical>
<RegistryNumber>0</RegistryNumber>
<NameOfSubstance UI="D005227">Fatty Acids</NameOfSubstance>
</Chemical>
<Chemical>
<RegistryNumber>0</RegistryNumber>
<NameOfSubstance UI="D010713">Phosphatidylcholines</NameOfSubstance>
</Chemical>
<Chemical>
<RegistryNumber>0</RegistryNumber>
<NameOfSubstance UI="D010714">Phosphatidylethanolamines</NameOfSubstance>
</Chemical>
<Chemical>
<RegistryNumber>0</RegistryNumber>
<NameOfSubstance UI="D012336">RNA, Ribosomal, 16S</NameOfSubstance>
</Chemical>
<Chemical>
<RegistryNumber>1339-63-5</RegistryNumber>
<NameOfSubstance UI="D014451">Ubiquinone</NameOfSubstance>
</Chemical>
<Chemical>
<RegistryNumber>39382-08-6</RegistryNumber>
<NameOfSubstance UI="C483858">phosphatidylethanolamine</NameOfSubstance>
</Chemical>
<Chemical>
<RegistryNumber>I7T5V2W47R</RegistryNumber>
<NameOfSubstance UI="C025204">Ubiquinone Q2</NameOfSubstance>
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<CitationSubset>IM</CitationSubset>
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<MeshHeading>
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<MeshHeading>
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<QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName>
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<QualifierName UI="Q000737" MajorTopicYN="N">chemistry</QualifierName>
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</country>
<region>
<li>Guangdong</li>
<li>Hubei</li>
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<name sortKey="Guo, Youhao" sort="Guo, Youhao" uniqKey="Guo Y" first="Youhao" last="Guo">Youhao Guo</name>
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<name sortKey="Qiu, Xia" sort="Qiu, Xia" uniqKey="Qiu X" first="Xia" last="Qiu">Xia Qiu</name>
<name sortKey="Tang, Yali" sort="Tang, Yali" uniqKey="Tang Y" first="Yali" last="Tang">Yali Tang</name>
<name sortKey="Xue, Xiuqing" sort="Xue, Xiuqing" uniqKey="Xue X" first="Xiuqing" last="Xue">Xiuqing Xue</name>
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</country>
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